Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

PRJNA729801

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Exceptional-scale Illumina NovaSeq 6000 short-read amplicon of wastewater community with 7.7B reads and excellent quality (96.5% Q20, 91.7% Q30), enabling ultra-deep pathogen and antibiotic-resistance gene surveying. Massive depth supports strain-level resolution and rare variant detection in complex environmental samples.

Data type / assay
amplicon
Organism
wastewater metagenome
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
640 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1699685617826 reported
total reads 7673906313 reported
n content pct 0.003 measured
pct q20 bases 96.5 measured
pct q30 bases 91.7 measured
gc content pct 51 measured
mean read length 151 measured
mean base quality 35.5 measured
adapter content pct 63.45 measured
duplication rate pct 31.77 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%
adapter content pct 63.45 measured ×0.5 0%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0