Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA729981

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing of a synthetic microbial construct on an Illumina MiSeq with 12.6 million short reads at 95% Q30. The high quality and defined target make this ideal for validation of bioinformatic pipelines or benchmarking community detection algorithms.

Data type / assay
amplicon
Organism
synthetic construct
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
149 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1630196364 reported
total reads 12593393 reported
n content pct 0.003 measured
pct q20 bases 97.5 measured
pct q30 bases 95.4 measured
gc content pct 47 measured
mean read length 100 measured
mean base quality 36.1 measured
adapter content pct 0 measured
duplication rate pct 93.85 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0