Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA730222

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq short-read amplicon of bioreactor-grown microbial community with 3.7M reads and moderate base quality (90.6% Q20, 85.2% Q30), sufficient for tracking community composition changes during fermentation or bioprocess monitoring. Limited depth per sample suggests rapid screening application.

Data type / assay
amplicon
Organism
bioreactor metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
42 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1896797538 reported
total reads 3664338 reported
n content pct 0 measured
pct q20 bases 90.6 measured
pct q30 bases 85.2 measured
gc content pct 54.3 measured
mean read length 250 measured
mean base quality 33.9 measured
adapter content pct 0.04 measured
duplication rate pct 87.83 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.2 measured ×1 76%
adapter content pct 0.04 measured ×0.5 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0