PRJNA73205

BioProject first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

37/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Sanger-equivalent capillary sequencing (AB 310 Genetic Analyzer) of salt-tolerant plant (Eutrema salsugineum) with 3.7M reads and lower quality (74.1% Q20, 59.7% Q30), legacy method suitable for targeted genomic loci or re-analysis of historical datasets. Limited throughput appropriate for focused studies.

Data type / assay

WGS

Organism

Eutrema salsugineum

Instrument

AB 310 Genetic Analyzer

Platform

CAPILLARY

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

70 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3062742600 reported

total reads 3675283 reported

n content pct 0.008 measured

pct q20 bases 74.1 measured

pct q30 bases 59.7 measured

gc content pct 39.4 measured

mean read length 860.5 measured

mean base quality 36.3 measured

adapter content pct 0 measured

duplication rate pct 20.9 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 37/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 59.7 measured ×1 0%

duplication rate pct 20.9 measured ×0.5 60%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0