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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
17/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Ion Torrent S5
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
89 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
4551802730
reported
total reads
12154774
reported
n content pct
0
measured
pct q20 bases
87.7
measured
pct q30 bases
48.1
measured
gc content pct
53.4
measured
mean read length
380.3
measured
mean base quality
27.4
measured
adapter content pct
0
measured
duplication rate pct
93.49
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 17/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
48.1
measured
×1
0%
mean base quality
27.4
measured
×0.6
0%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
93.49
measured
×0.4
0%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0