Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA735905

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus bulk RNA-seq via NovaSeq 6000 from 51 samples totaling 841 billion bases (97.6% Q20), delivering ultra-deep mouse transcriptomics across multiple conditions or tissues; exceptional yield and quality enable sensitive low-abundance transcript detection and robust statistical comparisons.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
51 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 840919470900 reported
total reads 2803064903 reported
n content pct 0 measured
pct q20 bases 97.6 measured
pct q30 bases 93.4 measured
gc content pct 47.8 measured
mean read length 150 measured
mean base quality 35.9 measured
adapter content pct 0.49 measured
duplication rate pct 14.62 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 0.49 measured ×0.4 100%
duplication rate pct 14.62 measured ×0.4 100%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0