Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA737517

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

15/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon metagenome sequencing (dinoflagellate). Grade F (15/100) is unsuitable for reuse. Catastrophic adapter contamination at 15.61% (0/100) and substandard Q30 of 74.4% (22/100) indicate severe library preparation or sequencing failure; the 93% duplication rate confirms amplicon collapse. Deep measured QC pass unlikely to improve the verdict.

Data type / assay
amplicon
Organism
dinoflagellate metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
21 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 860956200 reported
total reads 1434927 reported
n content pct 0.025 measured
pct q20 bases 84.8 measured
pct q30 bases 74.4 measured
gc content pct 51.3 measured
mean read length 300 measured
mean base quality 31.9 measured
adapter content pct 15.61 measured
duplication rate pct 93.23 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 15/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.4 measured ×1 22%
adapter content pct 15.61 measured ×0.5 0%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0