PRJNA73791

BioProject first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

35/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Nannochloropsis gaditana (marine microalga) WGS from a 454 GS FLX Titanium platform with 56 million reads at 72% Q30. The long reads assist in resolving repetitive elements and assembling the chloroplast and mitochondrial genomes.

Data type / assay

WGS

Organism

Nannochloropsis gaditana CCMP526

Instrument

454 GS FLX Titanium

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

5 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10005242652 reported

total reads 56120820 reported

n content pct 0.022 measured

pct q20 bases 88.5 measured

pct q30 bases 71.6 measured

gc content pct 52.9 measured

mean read length 398.1 measured

mean base quality 33.1 measured

adapter content pct 0 measured

duplication rate pct 27.98 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 35/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.6 measured ×1 8%

duplication rate pct 27.98 measured ×0.5 38%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0