Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA741613

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Saccharomyces cerevisiae amplicon dataset from an Illumina MiSeq generating 4.3 billion short reads (1.3 trillion bases) at 89% Q30. The massive read count is unusual for amplicon studies and may reflect experimental design for ultra-high-resolution population structure analysis.

Data type / assay
amplicon
Organism
Saccharomyces cerevisiae
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
855 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1300422598874 reported
total reads 4325691629 reported
n content pct 0.001 measured
pct q20 bases 95.9 measured
pct q30 bases 89.1 measured
gc content pct 53.8 measured
mean read length 147.4 measured
mean base quality 35.1 measured
adapter content pct 0 measured
duplication rate pct 58.45 measured
mean target coverage 5418427.5 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%
adapter content pct 0 measured ×0.5 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0