PRJNA744493

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens whole-chromosome sequencing (WCS) on NextSeq 500 with 522M reads (72B bases, 23.3× extrapolated depth) and good quality (93.5% ≥Q20, 89.1% ≥Q30). Human genomics dataset supporting population variant discovery and chromosome-scale polymorphism studies.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

228 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 72279182031 reported

total reads 522409476 reported

mean coverage 23.3 extrapolated

n content pct 0.001 measured

pct q20 bases 93.5 measured

pct q30 bases 89.1 measured

gc content pct 41.1 measured

mean read length 141 measured

mean base quality 33.6 measured

adapter content pct 2.1 measured

duplication rate pct 1.89 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 23.3 extrapolated ×1.2 70%

pct q30 bases 89.1 measured ×1 96%

duplication rate pct 1.89 measured ×0.5 100%

adapter content pct 2.1 measured ×0.4 92%

QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0