Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA745391

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus targeted-capture WES via MinION long-read platform yielding 218 million bases (50.1% Q20) from just 7,617 reads, demonstrating reduced throughput and base accuracy typical of early nanopore sequencing; length advantage enables structural variant detection despite quality trade-offs.

Data type / assay
WES
Organism
Mus musculus
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 217805309 reported
total reads 7617 reported
n content pct 0 measured
pct q20 bases 50.1 measured
pct q30 bases 13.4 measured
gc content pct 41.6 measured
mean read length 26923.5 measured
mean base quality 18.6 measured
adapter content pct 0 measured
duplication rate pct 0.3 measured
mean target coverage 4 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 4 extrapolated ×1.2 0%
pct q30 bases 13.4 measured ×1 0%
duplication rate pct 0.3 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0