PRJNA746556

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus amplicon long-read sequencing via PacBio RS with 9M reads (48.3B bases) and exceptional quality (99.4% ≥Q20, 98.7% ≥Q30). Enables long-amplicon sequencing and accurate full-length transcript/isoform characterization in mouse genetics.

Data type / assay

amplicon

Organism

Mus musculus

Instrument

PacBio RS

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 48262109383 reported

total reads 9044084 reported

n content pct 0 measured

pct q20 bases 99.4 measured

pct q30 bases 98.7 measured

gc content pct 40 measured

mean read length 5268.8 measured

mean base quality 87.9 measured

adapter content pct 0 measured

duplication rate pct 0.82 measured

mean target coverage 893.7 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.7 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0