Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA748720

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human gut metagenome amplicon sequencing via MiSeq from 37 samples totaling 2.2 billion bases (92.5% Q20), supporting microbiome profiling with good per-sample yield and established taxonomy reference compatibility.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
37 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2205981772 reported
total reads 4394386 reported
n content pct 0 measured
pct q20 bases 92.5 measured
pct q30 bases 81.7 measured
gc content pct 51.8 measured
mean read length 251 measured
mean base quality 33.8 measured
adapter content pct 0 measured
duplication rate pct 98.42 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.7 measured ×1 59%
adapter content pct 0 measured ×0.5 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0