Corpus 1,278 assessed · 1,179 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA750109

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Large-scale Illumina HiSeq 2500 amplicon of yeast (Saccharomyces cerevisiae) with 767.5M reads and excellent quality (97% Q20, 91.8% Q30), enabling comprehensive allelic and expression variation profiling. Massive depth supports rare allele detection and population genetics in model eukaryote.

Data type / assay
amplicon
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
539 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 385098994638 reported
total reads 767543179 reported
n content pct 0 measured
pct q20 bases 97 measured
pct q30 bases 91.8 measured
gc content pct 41.5 measured
mean read length 250 measured
mean base quality 35.6 measured
adapter content pct 0.87 measured
duplication rate pct 94.77 measured
mean target coverage 1604579.1 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.8 measured ×1 100%
adapter content pct 0.87 measured ×0.5 100%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0