PRJNA752170

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Oxford Nanopore MinION long-read WGS of human genome at moderate coverage (~47×) with low per-base accuracy (26% Q20) typical of nanopore sequencing; highly valuable for structural variant, repeat, and large indel characterization inaccessible to short-read methods.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

237 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 146353431475 reported

total reads 16921894 reported

mean coverage 47.2 extrapolated

n content pct 0 measured

pct q20 bases 26 measured

pct q30 bases 6.4 measured

gc content pct 40.5 measured

mean read length 9000.9 measured

mean base quality 14.1 measured

adapter content pct 0 measured

duplication rate pct 0 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 47.2 extrapolated ×1.2 100%

pct q30 bases 6.4 measured ×1 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0