PRJNA758191

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina MiSeq amplicon of malaria parasite (Plasmodium falciparum) yielding 91.8M reads with high N-content (3.7%) and very low GC (31.9%) reflecting AT-rich parasite genome, suitable for population genetics and drug-resistance surveillance. Base quality adequate (93.7% Q20) for genotyping despite challenging target composition.

Data type / assay

amplicon

Organism

Plasmodium falciparum

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

400 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 30648330584 reported

total reads 91750411 reported

n content pct 3.7 measured

pct q20 bases 93.7 measured

pct q30 bases 92.9 measured

gc content pct 31.9 measured

mean read length 199.5 measured

mean base quality 36.3 measured

adapter content pct 0 measured

duplication rate pct 95.93 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.9 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0