PRJNA762591

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Globe skimmer dragonfly (Pantala flavescens) bulk-RNA-seq on NovaSeq 6000 produced 607.7 million 150 bp reads at 98.6% Q20 and 95.6% Q30 across 181 Gb. The 37.6% GC is lower than mammalian transcriptomes, consistent with insect genomes; outstanding depth enables comprehensive transcriptome profiling for comparative genomics and evolution of insect development.

Data type / assay

bulk-RNA-seq

Organism

Pantala flavescens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 181094328293 reported

total reads 607672466 reported

n content pct 0.004 measured

pct q20 bases 98.6 measured

pct q30 bases 95.6 measured

gc content pct 37.6 measured

mean read length 151 measured

mean base quality 36.3 measured

adapter content pct 7.81 measured

duplication rate pct 70.77 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 36.3 measured ×0.6 100%

adapter content pct 7.81 measured ×0.4 68%

duplication rate pct 70.77 measured ×0.4 9%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0