PRJNA778664

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse gut amplicon survey from an Illumina MiSeq with 1.5 million short reads at 88% Q30. The shallow depth is suitable for compositional surveys but may miss rare taxa.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

15 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 716824696 reported

total reads 1480250 reported

n content pct 0 measured

pct q20 bases 95 measured

pct q30 bases 88.1 measured

gc content pct 55 measured

mean read length 242 measured

mean base quality 34.9 measured

adapter content pct 0.01 measured

duplication rate pct 94.97 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%

adapter content pct 0.01 measured ×0.5 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0