PRJNA783624

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus bulk RNA-Seq on NovaSeq 6000 with 3.2B reads (854B bases) at good quality (94.5% ≥Q20, 92.5% ≥Q30). Ultra-large-scale mouse transcriptomics dataset supporting comprehensive gene expression studies in mammalian systems.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

70 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 854513434527 reported

total reads 3217579334 reported

n content pct 0.001 measured

pct q20 bases 94.5 measured

pct q30 bases 92.5 measured

gc content pct 44.3 measured

mean read length 76 measured

mean base quality 34.1 measured

adapter content pct 0.43 measured

duplication rate pct 64.18 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%

mean base quality 34.1 measured ×0.6 100%

adapter content pct 0.43 measured ×0.4 100%

duplication rate pct 64.18 measured ×0.4 24%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0