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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
100/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
571429567917
reported
total reads
2044775726
reported
n content pct
1.951
measured
pct q20 bases
95.6
measured
pct q30 bases
91.9
measured
gc content pct
57.3
measured
mean read length
137.7
measured
mean base quality
35.2
measured
adapter content pct
0.01
measured
duplication rate pct
39.41
measured
mean target coverage
9216.6
extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
91.9
measured
×1
100%
adapter content pct
0.01
measured
×0.5
100%
QC cost
27 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0