Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA795271

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina NovaSeq 6000 short-read amplicon of mouse gut microbiota with 3.2M reads at high quality (96% Q20, 91.2% Q30), leveraging deep-sequencing capability for rare taxon detection. Enables investigation of low-abundance community members and sensitive ecological transitions.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
61 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1584237000 reported
total reads 3168474 reported
n content pct 0.001 measured
pct q20 bases 96 measured
pct q30 bases 91.2 measured
gc content pct 52.3 measured
mean read length 250 measured
mean base quality 35.2 measured
adapter content pct 0 measured
duplication rate pct 98.04 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0