PRJNA810279

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS (Oryctolagus cuniculus, BGISEQ-500). A grade, excellent for reuse. Outstanding WGS quality: high base quality (Q30=95.1%), exceptionally low duplication (1.91%), and zero adapter contamination minimize variant-calling artifacts and support confident genomic inference.

Data type / assay

WGS

Organism

Oryctolagus cuniculus

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

642 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7057565112300.001 reported

total reads 47050434082 reported

n content pct 0 measured

pct q20 bases 98.7 measured

pct q30 bases 95.1 measured

gc content pct 44.9 measured

mean read length 150 measured

mean base quality 35.7 measured

adapter content pct 0 measured

duplication rate pct 1.91 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%

duplication rate pct 1.91 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0