Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA810742

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq short-read amplicon of human gut microbiota with 9.4M reads at excellent quality (98.3% Q20, 94.1% Q30), enabling high-confidence taxonomic classification and quantification of dominant and subdominant bacterial members. Suitable for clinical microbiota profiling applications.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
188 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5655043520 reported
total reads 9393760 reported
n content pct 0 measured
pct q20 bases 98.3 measured
pct q30 bases 94.1 measured
gc content pct 54.7 measured
mean read length 301 measured
mean base quality 36.5 measured
adapter content pct 0.01 measured
duplication rate pct 98.49 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.1 measured ×1 100%
adapter content pct 0.01 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0