PRJNA812276

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Yersinia enterocolitica RNA-seq from an Illumina NovaSeq 6000 with 77 million short reads at exceptional 100% Q30, generating 23.4 billion bases. The perfect quality and high depth enable definitive identification of bacterial stress response genes and pathogenic mechanisms.

Data type / assay

bulk-RNA-seq

Organism

Yersinia enterocolitica

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 23390585842 reported

total reads 77452271 reported

n content pct 0.001 measured

pct q20 bases 99.9 measured

pct q30 bases 99.9 measured

gc content pct 50.4 measured

mean read length 151 measured

mean base quality 30 measured

adapter content pct 29.28 measured

duplication rate pct 89.05 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.9 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 29.28 measured ×0.4 0%

duplication rate pct 89.05 measured ×0.4 0%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0