PRJNA814623

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Biogas fermenter metagenome long-read WGS via MinION platform reaching 3.9 billion bases (52% Q20) from 611,663 reads, enabling complete genome assembly of dominant fermentation organisms despite characteristic nanopore quality limitations.

Data type / assay

WGS

Organism

biogas fermenter metagenome

Instrument

MinION

Platform

OXFORD_NANOPORE

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3908766452 reported

total reads 611663 reported

n content pct 0 measured

pct q20 bases 52 measured

pct q30 bases 27.7 measured

gc content pct 41.7 measured

mean read length 5449.8 measured

mean base quality 21.2 measured

adapter content pct 0.01 measured

duplication rate pct 0.33 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 27.7 measured ×1 0%

duplication rate pct 0.33 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 52 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0