PRJNA815849

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Saccharomyces cerevisiae amplicon sequencing via MiSeq from 408 samples reaching 108 billion bases (99% Q20), providing ultra-high sample throughput for targeted genomic region profiling in this model organism; massive sample count reflects large experimental design.

Data type / assay

amplicon

Organism

Saccharomyces cerevisiae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

408 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 108598503171 reported

total reads 1071232591 reported

n content pct 0.002 measured

pct q20 bases 99 measured

pct q30 bases 96.4 measured

gc content pct 42.1 measured

mean read length 77.6 measured

mean base quality 36.4 measured

adapter content pct 0 measured

duplication rate pct 42.2 measured

mean target coverage 452493.8 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.4 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0