PRJNA859257

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human RNA-seq from an Illumina HiSeq 2000 with 138 million short reads at exceptional 100% Q30, generating 41.5 billion bases. The flawless quality supports precise variant calling and isoform quantification in human transcriptomics studies.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

6 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 41542338600 reported

total reads 138474462 reported

n content pct 0.001 measured

pct q20 bases 99.9 measured

pct q30 bases 99.9 measured

gc content pct 44.9 measured

mean read length 150 measured

mean base quality 30 measured

adapter content pct 0.93 measured

duplication rate pct 27.63 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.9 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.93 measured ×0.4 100%

duplication rate pct 27.63 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0