PRJNA859413

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens miRNA-seq via HiSeq 2000 from three samples totaling 48.3 billion bases (99.9% Q20), enabling sensitive microRNA expression profiling with outstanding read quality for this small RNA application.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

3 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 48287146800 reported

total reads 160957156 reported

n content pct 0.001 measured

pct q20 bases 99.9 measured

pct q30 bases 99.9 measured

gc content pct 47.1 measured

mean read length 150 measured

mean base quality 30 measured

adapter content pct 0.52 measured

duplication rate pct 38.42 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.9 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.52 measured ×0.4 100%

duplication rate pct 38.42 measured ×0.4 81%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0