Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA865279

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human gut amplicon dataset from an Illumina NovaSeq 6000 with 4.8 million short reads at 87% Q30. The moderate depth is appropriate for basic microbiota composition surveys in microbiome studies.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
39 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2388496500 reported
total reads 4776993 reported
n content pct 0.001 measured
pct q20 bases 94.1 measured
pct q30 bases 86.5 measured
gc content pct 54.9 measured
mean read length 250 measured
mean base quality 34.6 measured
adapter content pct 0.26 measured
duplication rate pct 90.53 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.5 measured ×1 83%
adapter content pct 0.26 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0