PRJNA884103

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Enterobacter cloacae whole-genome sequencing via NovaSeq 6000 from 468 samples totaling 568 billion bases (100% Q20, 100% Q30), enabling ultra-high-throughput bacterial genomics with perfect sequence quality.

Data type / assay

WGS

Organism

Enterobacter cloacae

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

468 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 568240917604 reported

total reads 2286327775 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 42.2 measured

mean read length 123.3 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 24.15 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

duplication rate pct 24.15 measured ×0.5 50%

adapter content pct 0 measured ×0.4 100%

QC cost 56 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0