Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA898646

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

18/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq targeted amplicon profiling of human DNA with moderate per-read quality (75.4% Q20) across large sample sets (579 files) and ~37 million total reads, optimized for population-scale genotyping or screening studies over accuracy.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
579 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16542651018 reported
total reads 37209759 reported
n content pct 0 measured
pct q20 bases 75.4 measured
pct q30 bases 75.4 measured
gc content pct 47.6 measured
mean read length 301 measured
mean base quality 23.4 measured
adapter content pct 91.64 measured
duplication rate pct 98.15 measured
mean target coverage 266.8 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 18/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75.4 measured ×1 27%
adapter content pct 91.64 measured ×0.5 0%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0