Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA901870

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Saccharomyces cerevisiae hybrid amplicon data from an Illumina NovaSeq 6000 with 90 million reads at 93% Q30, combining short and long read technologies. The hybrid approach aids in resolving complex amplicon structures and copy-number variation.

Data type / assay
amplicon
Organism
Saccharomyces cerevisiae
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 37020391567 reported
total reads 90165472 reported
n content pct 0 measured
pct q20 bases 96.7 measured
pct q30 bases 92.8 measured
gc content pct 38.1 measured
mean read length 150 measured
mean base quality 35.7 measured
adapter content pct 29.1 measured
duplication rate pct 22.99 measured
mean target coverage 154251.6 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
adapter content pct 29.1 measured ×0.5 0%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0