Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA913668

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Gut metagenome bulk RNA-Seq from HiSeq 2000 with 960k reads at good quality (95.2% ≥Q20, 88.8% ≥Q30). Small-scale metatranscriptomics dataset for characterizing microbial gene expression in gastrointestinal environments.

Data type / assay
bulk-RNA-seq
Organism
gut metagenome
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 578368490 reported
total reads 960745 reported
n content pct 0 measured
pct q20 bases 95.2 measured
pct q30 bases 88.8 measured
gc content pct 55.5 measured
mean read length 301 measured
mean base quality 35.1 measured
adapter content pct 0.01 measured
duplication rate pct 96.26 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.8 measured ×1 94%
mean base quality 35.1 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 96.26 measured ×0.4 0%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0