PRJNA916060

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens amplicon sequencing via Illumina MiSeq with 235M reads (58B bases) at good quality (95.1% ≥Q20, 92.2% ≥Q30). Large-scale targeted sequencing supporting human genetic variant discovery and multiplexed amplicon-based genotyping applications.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

4,987 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 58140109193 reported

total reads 235622917 reported

n content pct 0.001 measured

pct q20 bases 95.1 measured

pct q30 bases 92.2 measured

gc content pct 59.6 measured

mean read length 282.6 measured

mean base quality 35.8 measured

adapter content pct 5.94 measured

duplication rate pct 92.74 measured

mean target coverage 937.7 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%

adapter content pct 5.94 measured ×0.5 65%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0