Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA939256

BioProject first seen 2024

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human gut metagenome amplicon survey via Illumina MiSeq delivers 2.6M high-quality reads (97.7% ≥Q20/Q30), enabling precise community composition profiling despite smaller sample size. Exceptional per-base quality compensates for moderate depth; ideal for targeted clinical studies or hypothesis-driven ecological surveys with clear a priori questions.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1579906674 reported
total reads 2635742 reported
n content pct 0 measured
pct q20 bases 97.7 measured
pct q30 bases 97.7 measured
gc content pct 53.9 measured
mean read length 300 measured
mean base quality 29.4 measured
adapter content pct 0 measured
duplication rate pct 97.36 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0