SAMN10086663
BioSampleProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
75/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Shigella sonnei WGS on MiSeq with 694k 235.4 bp reads at 88.3% Q20 and 82.6% Q30 provides modest coverage for bacterial genome assembly. The 51.3% GC is typical of Shigella; sufficient quality for core-genome recovery and plasmid detection in clinical isolate characterization.
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0
Scientific quality
Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.