SRP000982

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

44/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Ovis aries (sheep) whole-genome sequencing via 454 GS FLX generating 49 million bases (90.8% Q20), providing early mammalian genome data; 454 platform and modest total yield (189k reads) reflect early-generation sequencing limitations.

Data type / assay

WGS

Organism

Ovis aries

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 49275679 reported

total reads 189323 reported

n content pct 0.016 measured

pct q20 bases 90.8 measured

pct q30 bases 25.2 measured

gc content pct 42.6 measured

mean read length 242.3 measured

mean base quality 27.1 measured

adapter content pct 0 measured

duplication rate pct 11.57 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 44/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 25.2 measured ×1 0%

duplication rate pct 11.57 measured ×0.5 89%

adapter content pct 0 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0