SRP001851

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

44/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Cricetulus griseus (Chinese hamster) bulk RNA-Seq (FL-cDNA) via Illumina Genome Analyzer with 158M reads at moderate quality (93.7% ≥Q20, 71.6% ≥Q30). Full-length cDNA sequencing dataset for mammalian gene structure and isoform characterization.

Data type / assay

bulk-RNA-seq

Organism

Cricetulus griseus

Instrument

Illumina Genome Analyzer

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5696496396 reported

total reads 158236011 reported

n content pct 0.06 measured

pct q20 bases 93.7 measured

pct q30 bases 71.6 measured

gc content pct 48.7 measured

mean read length 36 measured

mean base quality 29.7 measured

adapter content pct 0 measured

duplication rate pct 16.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 44/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.6 measured ×1 8%

mean base quality 29.7 measured ×0.6 28%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 16.51 measured ×0.4 100%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0