Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRP002119

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mus musculus bulk RNA-Seq from Illumina Genome Analyzer with 215M reads at moderate-to-poor quality (68.2% ≥Q20, 41.9% ≥Q30). Large-scale mouse transcriptomics despite lower base quality; suitable for abundant transcript detection with stringent filtering.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 32715493368 reported
total reads 215233509 reported
n content pct 0.916 measured
pct q20 bases 68.2 measured
pct q30 bases 41.9 measured
gc content pct 54.4 measured
mean read length 76 measured
mean base quality 21.9 measured
adapter content pct 1.56 measured
duplication rate pct 15.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 41.9 measured ×1 0%
mean base quality 21.9 measured ×0.6 0%
adapter content pct 1.56 measured ×0.4 100%
duplication rate pct 15.76 measured ×0.4 100%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0