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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
10405934136
reported
total reads
289053726
reported
n content pct
1.744
measured
pct q20 bases
72.1
measured
pct q30 bases
48
measured
gc content pct
54.7
measured
mean read length
36
measured
mean base quality
23.5
measured
adapter content pct
0.02
measured
duplication rate pct
3.92
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
48
measured
×1
0%
QC cost
21 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0