← Dataset search
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Saccharomyces cerevisiae
Instrument
AB SOLiD System 3.0
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
34 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
45475748332
reported
total reads
1053135968
reported
n content pct
0.101
measured
pct q20 bases
92.4
measured
pct q30 bases
64.7
measured
gc content pct
45.2
measured
mean read length
38
measured
mean base quality
28.9
measured
adapter content pct
0
measured
duplication rate pct
58.5
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
64.7
measured
×1
0%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0