SRP006387

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Vicia faba (fava bean) WGS via 454 GS FLX Titanium generating 290 million bases (92.4% Q20), providing genome sequencing for this agricultural legume using 454 platform.

Data type / assay

WGS

Organism

Vicia faba

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 290499442 reported

total reads 578251 reported

n content pct 0.017 measured

pct q20 bases 92.4 measured

pct q30 bases 79.2 measured

gc content pct 44.4 measured

mean read length 313.5 measured

mean base quality 34.7 measured

adapter content pct 0 measured

duplication rate pct 47.8 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.2 measured ×1 46%

duplication rate pct 47.8 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0