SRP006575

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Homo sapiens bulk RNA-Seq from Illumina Genome Analyzer IIx with 2B reads (75.9B bases) at good quality (95.2% ≥Q20, 89.1% ≥Q30). Large-scale human transcriptomics dataset supporting comprehensive gene expression analysis and disease association studies.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

114 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 75862349592 reported

total reads 2028544633 reported

n content pct 0.023 measured

pct q20 bases 95.2 measured

pct q30 bases 89.1 measured

gc content pct 37.6 measured

mean read length 36 measured

mean base quality 35.5 measured

adapter content pct 1.26 measured

duplication rate pct 59.04 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 1.26 measured ×0.4 100%

duplication rate pct 59.04 measured ×0.4 36%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0