SRP007644

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

43/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Notothenioidei (Antarctic fish) RNA-seq via 454 GS FLX Titanium generating 124 million bases (82.4% Q20), capturing expressed sequences for these polar fish using 454 platform.

Data type / assay

bulk-RNA-seq

Organism

Notothenioidei

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 124052820 reported

total reads 219964 reported

n content pct 0.103 measured

pct q20 bases 82.4 measured

pct q30 bases 60.9 measured

gc content pct 41.5 measured

mean read length 288.7 measured

mean base quality 30.4 measured

adapter content pct 0 measured

duplication rate pct 20.19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 43/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 60.9 measured ×1 0%

mean base quality 30.4 measured ×0.6 40%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 20.19 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0