Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP007810

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Unclassified ssDNA viral amplicon survey from 454 GS FLX Titanium yields only 87K reads with moderate accuracy (88.4% ≥Q20, 68.3% ≥Q30), providing shallow viral community snapshot. Low read depth limits ecological inference and abundance estimation; best reused for presence/absence assays or rare-viral-species discovery rather than quantitative comparisons.

Data type / assay
amplicon
Organism
unclassified ssDNA viruses
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 47034282 reported
total reads 87444 reported
n content pct 0.025 measured
pct q20 bases 88.4 measured
pct q30 bases 68.3 measured
gc content pct 54.3 measured
mean read length 247.3 measured
mean base quality 32.1 measured
adapter content pct 0 measured
duplication rate pct 50.34 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 68.3 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0