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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
83/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Solanum lycopersicum
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
17435244693
reported
total reads
229362076
reported
n content pct
0.046
measured
pct q20 bases
100
measured
pct q30 bases
100
measured
gc content pct
44.1
measured
mean read length
61
measured
mean base quality
30
measured
adapter content pct
1.22
measured
duplication rate pct
10.09
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
100
measured
×1
100%
mean base quality
30
measured
×0.6
33%
adapter content pct
1.22
measured
×0.4
100%
duplication rate pct
10.09
measured
×0.4
100%
QC cost
36 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0