Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRP007991

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

66/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Drosophila bipectinata WGS via 454 GS FLX Titanium produces 62M high-quality reads (91% ≥Q20, 77% ≥Q30), enabling comparative genomics of this species complex. Moderate depth suits variant surveys and population genetic studies in non-model Drosophila; cross-reference with D. melanogaster for synteny and ortholog mapping.

Data type / assay
WGS
Organism
Drosophila bipectinata
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20302692497 reported
total reads 62834219 reported
n content pct 0.012 measured
pct q20 bases 91 measured
pct q30 bases 77 measured
gc content pct 38.2 measured
mean read length 313.5 measured
mean base quality 34.2 measured
adapter content pct 0 measured
duplication rate pct 8.07 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 66/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 77 measured ×1 35%
duplication rate pct 8.07 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0