SRP008002

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

53/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila elegans WGS from a 454 GS FLX Titanium platform with 54 million long reads at 73% Q30. The longer reads assist in resolving Drosophila-specific polymorphisms and structural variants.

Data type / assay

WGS

Organism

Drosophila elegans

Instrument

454 GS FLX Titanium

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

23 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 18122783755 reported

total reads 54026323 reported

n content pct 0.015 measured

pct q20 bases 89 measured

pct q30 bases 73.1 measured

gc content pct 40 measured

mean read length 405.1 measured

mean base quality 33.4 measured

adapter content pct 0 measured

duplication rate pct 11.66 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 53/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.1 measured ×1 16%

duplication rate pct 11.66 measured ×0.5 89%

adapter content pct 0 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0