SRP008020

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila kikkawai WGS from a 454 GS FLX Titanium platform with 46 million long reads at 73% Q30. The longer reads facilitate assembly of this Drosophila species' genome and detection of species-specific polymorphisms.

Data type / assay

WGS

Organism

Drosophila kikkawai

Instrument

454 GS FLX Titanium

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

19 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12817269677 reported

total reads 46782168 reported

n content pct 0.016 measured

pct q20 bases 89.2 measured

pct q30 bases 73.2 measured

gc content pct 41.3 measured

mean read length 375.6 measured

mean base quality 33.4 measured

adapter content pct 0 measured

duplication rate pct 7.45 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.2 measured ×1 16%

duplication rate pct 7.45 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0