SRP008123

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mouse RNA-seq from an Illumina Genome Analyzer IIx with 243 million short reads at 76% Q30. The moderate quality and depth enable tissue-level gene expression profiling in mice.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 15830696570 reported

total reads 243549178 reported

n content pct 0.107 measured

pct q20 bases 81.6 measured

pct q30 bases 75.6 measured

gc content pct 49.2 measured

mean read length 65 measured

mean base quality 30.9 measured

adapter content pct 0.18 measured

duplication rate pct 32.55 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75.6 measured ×1 28%

mean base quality 30.9 measured ×0.6 48%

adapter content pct 0.18 measured ×0.4 100%

duplication rate pct 32.55 measured ×0.4 94%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0